knitr::opts_chunk$set(echo = FALSE)
### Create Output Directory ###
# if save_output = TRUE
if(params$save_output){
outfile_dir <- paste0(params$output_dir,"/EpiCompare_file")
if(!dir.exists(outfile_dir)){
dir.create(outfile_dir, showWarnings = FALSE, recursive = TRUE)
}
}
#### ------ Prepare genome builds ------ ####
# e.g. genome_build <- list(reference="hg19",peakfiles="hg38",blacklist="hg19")
# or... genome_build <- "hg19"
builds <- prepare_genome_builds(genome_build = params$genome_build)
## Standardise all data to hg19 build
output_build <- prepare_output_build(params$genome_build_output)
#### ------ Prepare peaklist(s) ------ ####
# and check that the list is named, if not default filenames are used
peaklist <- prepare_peaklist(peaklist = params$peakfile)
peaklist <- liftover_grlist(grlist = peaklist,
input_build = builds$peaklist,
output_build = output_build)
#### ------ Prepare reference(s) ------ ####
reference <- prepare_reference(reference = params$reference)
reference <- liftover_grlist(grlist = reference,
input_build = builds$reference,
output_build = output_build)
#### ------ Prepare blacklist ------ ####
blacklist <- liftover_grlist(grlist = params$blacklist,
input_build = builds$blacklist,
output_build = output_build)
### Standardise peaklist(s) ###
peaklist_tidy <- tidy_peakfile(peaklist = peaklist,
blacklist = blacklist)
### Standardise reference(s) ###
# and include in peaklist
reference_tidy <- reference
if (!is.null(reference)){
reference_tidy <- tidy_peakfile(peaklist = reference,
blacklist = blacklist)
peaklist_tidy <- c(peaklist_tidy, reference_tidy)
}
### Obtain Genome Annotation ###
txdb <- check_genome_build(genome_build = output_build)
### Dynamic Figure Height ###
fig_height <- fig_length(default_size = 7,
number_of_items = length(peaklist_tidy),
max_items = 10)
EpiCompare compares epigenetic datasets for quality control and benchmarking purposes. The report consists of three sections:
## [1] "File1: C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2"
## [1] "File2: C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2"
## [1] "File3: C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2"
## [1] "File4: C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2"
## [1] "File5: C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2"
## [1] "File6: C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2"
## [1] "File7: C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR"
## [1] "File8: C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR"
## [1] "File9: C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR"
## [1] "File10: C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR"
## [1] "File11: C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File12: C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File13: C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File14: C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File15: C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR"
## [1] "File16: C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR"
## [1] "File17: C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR"
## [1] "File18: C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR"
## [1] "File19: C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR"
## [1] "File20: C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR"
## [1] "File21: C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File22: C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File23: C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File24: C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File25: C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR"
## [1] "File26: C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR"
## [1] "File27: C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR"
## [1] "File28: C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR"
## [1] "File29: C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR"
## [1] "File30: C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR"
## [1] "File31: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1"
## [1] "File32: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2"
## [1] "File33: TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1"
## [1] "File34: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1"
## [1] "File35: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1"
## [1] "File36: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1"
## [1] "File37: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1"
## [1] "File38: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1"
## [1] "File39: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1"
## [1] "File40: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1"
## [1] "File41: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1"
## [1] "File42: TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1"
## [1] "File43: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1"
## [1] "File44: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1"
## [1] "File45: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1"
## [1] "File46: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1"
## [1] "File47: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1"
## [1] "File48: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1"
## [1] "File49: ENCODE_H3K27ac_ENCFF038DDS"
The function call used to create the report.
EpiCompare(peakfiles = list(C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2, C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2, C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2, C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2, C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2, C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2, C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR, C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2, TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1, TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1, ENCODE_H3K27ac_ENCFF038DDS),
genome_build = hg19, hg38, hg19,
genome_build_output = hg19,
blacklist = blacklist,
picard_files = list(),
reference = ENCODE_H3K27ac_ENCFF038DDS,
upset_plot = TRUE,
stat_plot = TRUE,
chromHMM_plot = TRUE,
chromHMM_annotation = "K562",
chipseeker_plot = TRUE,
enrichment_plot = TRUE,
tss_plot = TRUE,
precision_recall_plot = TRUE,
interact = TRUE,
save_output = TRUE,
output_dir = "/Users/schilder/Desktop/CUT_n_TAG/EpiCompare/ENCODE_H3K27ac_ENCFF038DDS")
Column Description:
BRGenomics::tidyChromosomes().NB: EpiCompare uses filtered peakfiles (i.e. datasets after removing peaks in blacklisted regions and non-standard chromosomes)
## --- Running peak_info() ---
## Done.
| PeakN Before Tidy | Blacklisted Peaks Removed (%) | Non-standard Peaks Removed (%) | PeakN After Tidy | |
|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 28083 | 2.480 | 1.91000 | 26854 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 39607 | 1.290 | 0.83600 | 38766 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 5737 | 10.300 | 5.56000 | 4831 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 197469 | 0.447 | 0.42500 | 195749 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 15973 | 4.450 | 2.59000 | 14851 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 33480 | 2.340 | 1.13000 | 32323 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 7353 | 6.880 | 3.10000 | 6620 |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 23328 | 2.550 | 1.89000 | 22293 |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 4576 | 3.540 | 2.12000 | 4318 |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 6522 | 4.940 | 2.61000 | 6031 |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 11122 | 3.700 | 2.71000 | 10410 |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 5876 | 2.420 | 1.46000 | 5649 |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 4095 | 5.620 | 2.59000 | 3760 |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 65725 | 0.672 | 0.58700 | 64898 |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 4157 | 5.390 | 2.86000 | 3815 |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 9412 | 4.240 | 2.89000 | 8742 |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 6706 | 1.540 | 0.92500 | 6542 |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 7355 | 3.300 | 1.77000 | 6983 |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 74196 | 0.721 | 0.60900 | 73210 |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 6509 | 3.830 | 2.17000 | 6120 |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 8273 | 2.040 | 1.35000 | 7993 |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 6340 | 2.020 | 0.99400 | 6150 |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 6285 | 5.740 | 2.77000 | 5751 |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 78009 | 0.356 | 0.41700 | 77407 |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 7123 | 3.800 | 1.95000 | 6714 |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 8315 | 1.790 | 1.15000 | 8071 |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 4713 | 1.950 | 0.91200 | 4579 |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 4072 | 7.420 | 3.56000 | 3626 |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 69593 | 0.540 | 0.45700 | 68900 |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 3987 | 9.180 | 4.77000 | 3432 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 61464 | 0.236 | 0.01950 | 61319 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 116419 | 0.312 | 0.01030 | 116056 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 77999 | 0.333 | 0.01540 | 77739 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 68776 | 0.318 | 0.01740 | 68557 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 42087 | 0.152 | 0.02850 | 42023 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 121514 | 0.238 | 0.00988 | 121225 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 103900 | 0.236 | 0.01150 | 103655 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 76027 | 0.241 | 0.01580 | 75844 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 88978 | 0.249 | 0.01350 | 88756 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 69386 | 0.262 | 0.01730 | 69204 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 83023 | 0.257 | 0.01450 | 82810 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 73454 | 0.317 | 0.01630 | 73221 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 66575 | 0.424 | 0.01800 | 66293 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 66193 | 0.224 | 0.01810 | 66045 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 79191 | 0.516 | 0.01520 | 78782 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 86061 | 0.464 | 0.01390 | 85662 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 81669 | 0.307 | 0.01470 | 81418 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 79023 | 0.248 | 0.01520 | 78827 |
Metrics on fragments is shown only if Picard summary is provided. See manual for help.
Column Description:
Distribution of peak widths in samples
Percentage of overlapping peaks between samples. Hover over heatmap for percentage values.
N.B. How to interpret heatmap: [Samples in x-axis of heatmap] peaks in [Samples in y-axis of heatmap] peaks
Depending on the format of the reference file, EpiCompare outputs different plots:
Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS
Keys:
The first plot shows the balance between precision and recall across multiple peak calling stringency thresholds.
The second plot shows F1 score (a score that combines precision and recall) across the different peak calling calling stringency thresholds.
2*(precision*recall) / (precision+recall)ChromHMM annotates and characterises peaks into different chromatin states. ChromHMM annotations used in EpiCompare were obtained from here.
ChromHMM annotation of individual samples.
Percentage of Sample peaks found in Reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 16495 | 26854 | 61.400 | precision | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 30658 | 38766 | 79.100 | precision | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 3113 | 4831 | 64.400 | precision | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 1950 | 195749 | 0.996 | precision | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 12669 | 14851 | 85.300 | precision | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 27049 | 32323 | 83.700 | precision | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5397 | 6620 | 81.500 | precision | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 12553 | 22293 | 56.300 | precision | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3973 | 4318 | 92.000 | precision | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5577 | 6031 | 92.500 | precision | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7075 | 10410 | 68.000 | precision | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5255 | 5649 | 93.000 | precision | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3260 | 3760 | 86.700 | precision | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 251 | 64898 | 0.387 | precision | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3382 | 3815 | 88.700 | precision | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5728 | 8742 | 65.500 | precision | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6238 | 6542 | 95.400 | precision | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6232 | 6983 | 89.200 | precision | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 1783 | 73210 | 2.440 | precision | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5563 | 6120 | 90.900 | precision | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7130 | 7993 | 89.200 | precision | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5604 | 6150 | 91.100 | precision | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 4811 | 5751 | 83.700 | precision | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 328 | 77407 | 0.424 | precision | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6272 | 6714 | 93.400 | precision | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7170 | 8071 | 88.800 | precision | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 4260 | 4579 | 93.000 | precision | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3156 | 3626 | 87.000 | precision | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 168 | 68900 | 0.244 | precision | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 2934 | 3432 | 85.500 | precision | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26507 | 61319 | 43.200 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS | 23479 | 116056 | 20.200 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24195 | 77739 | 31.100 | precision | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24675 | 68557 | 36.000 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 21787 | 42023 | 51.800 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 22757 | 121225 | 18.800 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24446 | 103655 | 23.600 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24904 | 75844 | 32.800 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26534 | 88756 | 29.900 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 28154 | 69204 | 40.700 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24770 | 82810 | 29.900 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26200 | 73221 | 35.800 | precision | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS | 516 | 66293 | 0.778 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS | 428 | 66045 | 0.648 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS | 795 | 78782 | 1.010 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1058 | 85662 | 1.240 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1065 | 81418 | 1.310 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1038 | 78827 | 1.320 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 52544 | 52544 | 100.000 | precision | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 13692 | 52544 | 26.100 | recall | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 28569 | 52544 | 54.400 | recall | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 2624 | 52544 | 4.990 | recall | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 1624 | 52544 | 3.090 | recall | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 10172 | 52544 | 19.400 | recall | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 22898 | 52544 | 43.600 | recall | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 6121 | 52544 | 11.600 | recall | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 14780 | 52544 | 28.100 | recall | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 5246 | 52544 | 9.980 | recall | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 7031 | 52544 | 13.400 | recall | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 8289 | 52544 | 15.800 | recall | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 7133 | 52544 | 13.600 | recall | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 4102 | 52544 | 7.810 | recall | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 286 | 52544 | 0.544 | recall | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 4198 | 52544 | 7.990 | recall | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 6544 | 52544 | 12.500 | recall | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 9620 | 52544 | 18.300 | recall | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 7986 | 52544 | 15.200 | recall | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 1939 | 52544 | 3.690 | recall | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 7088 | 52544 | 13.500 | recall | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 9269 | 52544 | 17.600 | recall | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 7156 | 52544 | 13.600 | recall | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 5633 | 52544 | 10.700 | recall | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 385 | 52544 | 0.733 | recall | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 8064 | 52544 | 15.300 | recall | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 9242 | 52544 | 17.600 | recall | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 5730 | 52544 | 10.900 | recall | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 3635 | 52544 | 6.920 | recall | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 195 | 52544 | 0.371 | recall | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 3264 | 52544 | 6.210 | recall | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 40547 | 52544 | 77.200 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 50814 | 52544 | 96.700 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 48428 | 52544 | 92.200 | recall | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 46439 | 52544 | 88.400 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 20232 | 52544 | 38.500 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 50728 | 52544 | 96.500 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 48955 | 52544 | 93.200 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 43979 | 52544 | 83.700 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 44523 | 52544 | 84.700 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 37651 | 52544 | 71.700 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 45750 | 52544 | 87.100 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 43390 | 52544 | 82.600 | recall | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 653 | 52544 | 1.240 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 527 | 52544 | 1.000 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 1045 | 52544 | 1.990 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 1461 | 52544 | 2.780 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 1419 | 52544 | 2.700 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 1341 | 52544 | 2.550 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 52544 | 52544 | 100.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
ChromHMM annotation of sample peaks found in reference peaks.
Percentage of Reference peaks found in Sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 13692 | 52544 | 26.100 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 28569 | 52544 | 54.400 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 2624 | 52544 | 4.990 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 1624 | 52544 | 3.090 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 10172 | 52544 | 19.400 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 22898 | 52544 | 43.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 6121 | 52544 | 11.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 14780 | 52544 | 28.100 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 5246 | 52544 | 9.980 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 7031 | 52544 | 13.400 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 8289 | 52544 | 15.800 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 7133 | 52544 | 13.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 4102 | 52544 | 7.810 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 286 | 52544 | 0.544 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 4198 | 52544 | 7.990 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 6544 | 52544 | 12.500 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 9620 | 52544 | 18.300 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 7986 | 52544 | 15.200 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 1939 | 52544 | 3.690 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 7088 | 52544 | 13.500 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 9269 | 52544 | 17.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 7156 | 52544 | 13.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 5633 | 52544 | 10.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 385 | 52544 | 0.733 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 8064 | 52544 | 15.300 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 9242 | 52544 | 17.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 5730 | 52544 | 10.900 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 3635 | 52544 | 6.920 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 195 | 52544 | 0.371 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 3264 | 52544 | 6.210 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 40547 | 52544 | 77.200 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 50814 | 52544 | 96.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 48428 | 52544 | 92.200 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 46439 | 52544 | 88.400 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 20232 | 52544 | 38.500 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 50728 | 52544 | 96.500 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 48955 | 52544 | 93.200 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 43979 | 52544 | 83.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 44523 | 52544 | 84.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 37651 | 52544 | 71.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 45750 | 52544 | 87.100 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 43390 | 52544 | 82.600 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 653 | 52544 | 1.240 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 527 | 52544 | 1.000 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 1045 | 52544 | 1.990 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 1461 | 52544 | 2.780 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 1419 | 52544 | 2.700 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 1341 | 52544 | 2.550 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 52544 | 52544 | 100.000 | precision | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 16495 | 26854 | 61.400 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 30658 | 38766 | 79.100 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 3113 | 4831 | 64.400 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 1950 | 195749 | 0.996 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 12669 | 14851 | 85.300 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 27049 | 32323 | 83.700 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5397 | 6620 | 81.500 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 12553 | 22293 | 56.300 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3973 | 4318 | 92.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5577 | 6031 | 92.500 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7075 | 10410 | 68.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5255 | 5649 | 93.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3260 | 3760 | 86.700 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 251 | 64898 | 0.387 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3382 | 3815 | 88.700 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5728 | 8742 | 65.500 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6238 | 6542 | 95.400 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6232 | 6983 | 89.200 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 1783 | 73210 | 2.440 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5563 | 6120 | 90.900 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7130 | 7993 | 89.200 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 5604 | 6150 | 91.100 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 4811 | 5751 | 83.700 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 328 | 77407 | 0.424 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 6272 | 6714 | 93.400 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 7170 | 8071 | 88.800 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 4260 | 4579 | 93.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3156 | 3626 | 87.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 168 | 68900 | 0.244 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 2934 | 3432 | 85.500 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26507 | 61319 | 43.200 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS | 23479 | 116056 | 20.200 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24195 | 77739 | 31.100 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24675 | 68557 | 36.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 21787 | 42023 | 51.800 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 22757 | 121225 | 18.800 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24446 | 103655 | 23.600 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24904 | 75844 | 32.800 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26534 | 88756 | 29.900 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 28154 | 69204 | 40.700 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 24770 | 82810 | 29.900 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS | 26200 | 73221 | 35.800 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS | 516 | 66293 | 0.778 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS | 428 | 66045 | 0.648 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS | 795 | 78782 | 1.010 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1058 | 85662 | 1.240 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1065 | 81418 | 1.310 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 1038 | 78827 | 1.320 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 52544 | 52544 | 100.000 | recall | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
ChromHMM annotation of reference peaks found in sample peaks.
Percentage of sample peaks not found in reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 10359 | 26854 | 38.60 | precision | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 8108 | 38766 | 20.90 | precision | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 1718 | 4831 | 35.60 | precision | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 193799 | 195749 | 99.00 | precision | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 2182 | 14851 | 14.70 | precision | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 5274 | 32323 | 16.30 | precision | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 1223 | 6620 | 18.50 | precision | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 9740 | 22293 | 43.70 | precision | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 345 | 4318 | 7.99 | precision | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 454 | 6031 | 7.53 | precision | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3335 | 10410 | 32.00 | precision | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 394 | 5649 | 6.97 | precision | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 500 | 3760 | 13.30 | precision | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 64647 | 64898 | 99.60 | precision | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 433 | 3815 | 11.30 | precision | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3014 | 8742 | 34.50 | precision | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 304 | 6542 | 4.65 | precision | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 751 | 6983 | 10.80 | precision | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 71427 | 73210 | 97.60 | precision | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 557 | 6120 | 9.10 | precision | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 863 | 7993 | 10.80 | precision | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 546 | 6150 | 8.88 | precision | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 940 | 5751 | 16.30 | precision | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 77079 | 77407 | 99.60 | precision | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 442 | 6714 | 6.58 | precision | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 901 | 8071 | 11.20 | precision | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 319 | 4579 | 6.97 | precision | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 470 | 3626 | 13.00 | precision | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 68732 | 68900 | 99.80 | precision | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 498 | 3432 | 14.50 | precision | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 34812 | 61319 | 56.80 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS | 92577 | 116056 | 79.80 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 53544 | 77739 | 68.90 | precision | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 43882 | 68557 | 64.00 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 20236 | 42023 | 48.20 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 98468 | 121225 | 81.20 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 79209 | 103655 | 76.40 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 50940 | 75844 | 67.20 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 62222 | 88756 | 70.10 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 41050 | 69204 | 59.30 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 58040 | 82810 | 70.10 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS | 47021 | 73221 | 64.20 | precision | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS | 65777 | 66293 | 99.20 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS | 65617 | 66045 | 99.40 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS | 77987 | 78782 | 99.00 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 84604 | 85662 | 98.80 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 80353 | 81418 | 98.70 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 77789 | 78827 | 98.70 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 0 | 52544 | 0.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 38852 | 52544 | 73.90 | recall | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 23975 | 52544 | 45.60 | recall | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 49920 | 52544 | 95.00 | recall | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 50920 | 52544 | 96.90 | recall | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 42372 | 52544 | 80.60 | recall | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 29646 | 52544 | 56.40 | recall | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 46423 | 52544 | 88.40 | recall | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 37764 | 52544 | 71.90 | recall | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 47298 | 52544 | 90.00 | recall | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 45513 | 52544 | 86.60 | recall | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 44255 | 52544 | 84.20 | recall | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 45411 | 52544 | 86.40 | recall | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 48442 | 52544 | 92.20 | recall | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 52258 | 52544 | 99.50 | recall | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 48346 | 52544 | 92.00 | recall | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 46000 | 52544 | 87.50 | recall | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 42924 | 52544 | 81.70 | recall | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 44558 | 52544 | 84.80 | recall | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 50605 | 52544 | 96.30 | recall | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 45456 | 52544 | 86.50 | recall | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 43275 | 52544 | 82.40 | recall | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 45388 | 52544 | 86.40 | recall | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 46911 | 52544 | 89.30 | recall | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 52159 | 52544 | 99.30 | recall | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 44480 | 52544 | 84.70 | recall | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 43302 | 52544 | 82.40 | recall | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 46814 | 52544 | 89.10 | recall | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 48909 | 52544 | 93.10 | recall | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 52349 | 52544 | 99.60 | recall | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 49280 | 52544 | 93.80 | recall | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 11997 | 52544 | 22.80 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 1730 | 52544 | 3.29 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 4116 | 52544 | 7.83 | recall | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 6105 | 52544 | 11.60 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 32312 | 52544 | 61.50 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 1816 | 52544 | 3.46 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 3589 | 52544 | 6.83 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 8565 | 52544 | 16.30 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 8021 | 52544 | 15.30 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 14893 | 52544 | 28.30 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 6794 | 52544 | 12.90 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 9154 | 52544 | 17.40 | recall | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 51891 | 52544 | 98.80 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 52017 | 52544 | 99.00 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 51499 | 52544 | 98.00 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 51083 | 52544 | 97.20 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 51125 | 52544 | 97.30 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 51203 | 52544 | 97.40 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 0 | 52544 | 0.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
ChromHMM annotation of sample peaks not found in reference peaks.
Percentage of reference peaks not found in sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 38852 | 52544 | 73.90 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 23975 | 52544 | 45.60 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 49920 | 52544 | 95.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 50920 | 52544 | 96.90 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 42372 | 52544 | 80.60 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 29646 | 52544 | 56.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 46423 | 52544 | 88.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 37764 | 52544 | 71.90 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 47298 | 52544 | 90.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 45513 | 52544 | 86.60 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 44255 | 52544 | 84.20 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 45411 | 52544 | 86.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 48442 | 52544 | 92.20 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 52258 | 52544 | 99.50 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 48346 | 52544 | 92.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 46000 | 52544 | 87.50 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 42924 | 52544 | 81.70 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 44558 | 52544 | 84.80 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 50605 | 52544 | 96.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 45456 | 52544 | 86.50 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 43275 | 52544 | 82.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 45388 | 52544 | 86.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 46911 | 52544 | 89.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 52159 | 52544 | 99.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 44480 | 52544 | 84.70 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 43302 | 52544 | 82.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 46814 | 52544 | 89.10 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 48909 | 52544 | 93.10 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 52349 | 52544 | 99.60 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 49280 | 52544 | 93.80 | precision | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 11997 | 52544 | 22.80 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 1730 | 52544 | 3.29 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 4116 | 52544 | 7.83 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 6105 | 52544 | 11.60 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 32312 | 52544 | 61.50 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 1816 | 52544 | 3.46 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 3589 | 52544 | 6.83 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 8565 | 52544 | 16.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 8021 | 52544 | 15.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 14893 | 52544 | 28.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 6794 | 52544 | 12.90 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 9154 | 52544 | 17.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 51891 | 52544 | 98.80 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 52017 | 52544 | 99.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 51499 | 52544 | 98.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 51083 | 52544 | 97.20 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 51125 | 52544 | 97.30 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 51203 | 52544 | 97.40 | precision | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 0 | 52544 | 0.00 | precision | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 10359 | 26854 | 38.60 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 8108 | 38766 | 20.90 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 1718 | 4831 | 35.60 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 193799 | 195749 | 99.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 2182 | 14851 | 14.70 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27ac_ENCFF038DDS | 5274 | 32323 | 16.30 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 1223 | 6620 | 18.50 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 9740 | 22293 | 43.70 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 345 | 4318 | 7.99 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 454 | 6031 | 7.53 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3335 | 10410 | 32.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 394 | 5649 | 6.97 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 500 | 3760 | 13.30 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 64647 | 64898 | 99.60 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 433 | 3815 | 11.30 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 3014 | 8742 | 34.50 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 304 | 6542 | 4.65 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 751 | 6983 | 10.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 71427 | 73210 | 97.60 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 557 | 6120 | 9.10 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 863 | 7993 | 10.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 546 | 6150 | 8.88 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 940 | 5751 | 16.30 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 77079 | 77407 | 99.60 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 442 | 6714 | 6.58 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 901 | 8071 | 11.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 319 | 4579 | 6.97 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 470 | 3626 | 13.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 68732 | 68900 | 99.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27ac_ENCFF038DDS | 498 | 3432 | 14.50 | recall | ENCODE_H3K27ac_ENCFF038DDS | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 34812 | 61319 | 56.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27ac_ENCFF038DDS | 92577 | 116056 | 79.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 53544 | 77739 | 68.90 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 43882 | 68557 | 64.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 20236 | 42023 | 48.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 98468 | 121225 | 81.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 79209 | 103655 | 76.40 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27ac_ENCFF038DDS | 50940 | 75844 | 67.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27ac_ENCFF038DDS | 62222 | 88756 | 70.10 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 41050 | 69204 | 59.30 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27ac_ENCFF038DDS | 58040 | 82810 | 70.10 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27ac_ENCFF038DDS | 47021 | 73221 | 64.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27ac_ENCFF038DDS | 65777 | 66293 | 99.20 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27ac_ENCFF038DDS | 65617 | 66045 | 99.40 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27ac_ENCFF038DDS | 77987 | 78782 | 99.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27ac_ENCFF038DDS | 84604 | 85662 | 98.80 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27ac_ENCFF038DDS | 80353 | 81418 | 98.70 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27ac_ENCFF038DDS | 77789 | 78827 | 98.70 | recall | ENCODE_H3K27ac_ENCFF038DDS | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS | 0 | 52544 | 0.00 | recall | ENCODE_H3K27ac_ENCFF038DDS | ENCODE_H3K27ac_ENCFF038DDS |
ChromHMM annotation of reference peaks not found in sample peaks.
EpiCompare uses ChIPseeker::annotatePeak() to annotate
peaks with the nearest gene and genomic regions where the peak is
located. The peaks are annotated with genes taken from human genome
annotations (hg19 or hg38) provided by Bioconductor.
EpiCompare performs KEGG pathway and GO enrichment analysis using
clusterProfiler. ChIPseeker::annotatePeak() is
first used to assign peaks to nearest genes. Biological themes amongst
the genes are identified using ontologies (KEGG and GO). The peaks are
annotated with genes taken from annotations of human genome (hg19 or
hg38) provided by Bioconductor.
This plots peaks that are mapping to transcriptional start sites (TSS). TSS regions are defined as the flanking sequence of the TSS sites. The frequency of peaks in downstream (-3000bp) and upstream (+3000bp) of TSS is plotted. Faint color line around the main frequency line represents the 95% confidence interval estimated by bootstrap method.
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## >> Running bootstrapping for tag matrix... 2022-06-08 16:54:19
## >> Running bootstrapping for tag matrix... 2022-06-08 16:56:19
## >> Running bootstrapping for tag matrix... 2022-06-08 16:57:25
## >> Running bootstrapping for tag matrix... 2022-06-08 16:58:02
## >> Running bootstrapping for tag matrix... 2022-06-08 16:58:48
## >> Running bootstrapping for tag matrix... 2022-06-08 16:59:46
## >> Running bootstrapping for tag matrix... 2022-06-08 17:00:49
## >> Running bootstrapping for tag matrix... 2022-06-08 17:01:38
## >> Running bootstrapping for tag matrix... 2022-06-08 17:03:28
## R version 4.2.0 (2022-04-22)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.3.1
##
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] rtracklayer_1.56.0 GenomicRanges_1.48.0 GenomeInfoDb_1.32.2 IRanges_2.30.0 S4Vectors_0.34.0
## [6] BiocGenerics_0.42.0 EpiCompare_0.99.20 PeakyFinders_0.99.1
##
## loaded via a namespace (and not attached):
## [1] utf8_1.2.2 reticulate_1.25
## [3] R.utils_2.11.0 tidyselect_1.1.2
## [5] htmlwidgets_1.5.4 RSQLite_2.2.14
## [7] AnnotationDbi_1.58.0 grid_4.2.0
## [9] BiocParallel_1.30.3 scatterpie_0.1.7
## [11] munsell_0.5.0 codetools_0.2-18
## [13] colorspace_2.0-3 GOSemSim_2.22.0
## [15] Biobase_2.56.0 filelock_1.0.2
## [17] highr_0.9 knitr_1.39
## [19] MACSr_1.4.0 rstudioapi_0.13
## [21] DOSE_3.22.0 labeling_0.4.2
## [23] MatrixGenerics_1.8.0 GenomeInfoDbData_1.2.8
## [25] polyclip_1.10-0 seqPattern_1.28.0
## [27] bit64_4.0.5 farver_2.1.0
## [29] downloader_0.4 rprojroot_2.0.3
## [31] basilisk_1.8.0 vctrs_0.4.1
## [33] treeio_1.20.0 generics_0.1.2
## [35] xfun_0.31 BiocFileCache_2.4.0
## [37] regioneR_1.28.0 R6_2.5.1
## [39] graphlayouts_0.8.0 locfit_1.5-9.5
## [41] bitops_1.0-7 BRGenomics_1.8.0
## [43] cachem_1.0.6 fgsea_1.22.0
## [45] gridGraphics_0.5-1 DelayedArray_0.22.0
## [47] assertthat_0.2.1 vroom_1.5.7
## [49] promises_1.2.0.1 BiocIO_1.6.0
## [51] scales_1.2.0 ggraph_2.0.5
## [53] enrichplot_1.16.1 gtable_0.3.0
## [55] tidygraph_1.2.1 rlang_1.0.2
## [57] genefilter_1.78.0 splines_4.2.0
## [59] lazyeval_0.2.2 impute_1.70.0
## [61] GEOquery_2.64.2 BiocManager_1.30.18
## [63] yaml_2.3.5 reshape2_1.4.4
## [65] crosstalk_1.2.0 GenomicFeatures_1.48.3
## [67] httpuv_1.6.5 qvalue_2.28.0
## [69] clusterProfiler_4.4.2 tools_4.2.0
## [71] gridBase_0.4-7 ggplotify_0.1.0
## [73] ggplot2_3.3.6 ellipsis_0.3.2
## [75] gplots_3.1.3 jquerylib_0.1.4
## [77] RColorBrewer_1.1-3 Rcpp_1.0.8.3
## [79] plyr_1.8.7 progress_1.2.2
## [81] zlibbioc_1.42.0 purrr_0.3.4
## [83] RCurl_1.98-1.6 basilisk.utils_1.8.0
## [85] prettyunits_1.1.1 viridis_0.6.2
## [87] SummarizedExperiment_1.26.1 ggrepel_0.9.1
## [89] here_1.0.1 magrittr_2.0.3
## [91] data.table_1.14.2 DO.db_2.9
## [93] matrixStats_0.62.0 hms_1.1.1
## [95] patchwork_1.1.1 mime_0.12
## [97] evaluate_0.15 xtable_1.8-4
## [99] XML_3.99-0.9 gridExtra_2.3
## [101] compiler_4.2.0 biomaRt_2.52.0
## [103] tibble_3.1.7 KernSmooth_2.23-20
## [105] crayon_1.5.1 shadowtext_0.1.2
## [107] R.oo_1.24.0 htmltools_0.5.2
## [109] ggfun_0.0.6 later_1.3.0
## [111] tzdb_0.3.0 tidyr_1.2.0
## [113] geneplotter_1.74.0 aplot_0.1.6
## [115] DBI_1.1.2 genomation_1.28.0
## [117] tweenr_1.0.2 ExperimentHub_2.4.0
## [119] ChIPseeker_1.32.0 dbplyr_2.2.0
## [121] MASS_7.3-57 rappdirs_0.3.3
## [123] boot_1.3-28 Matrix_1.4-1
## [125] readr_2.1.2 piggyback_0.1.3
## [127] cli_3.3.0 R.methodsS3_1.8.1
## [129] parallel_4.2.0 igraph_1.3.1
## [131] pkgconfig_2.0.3 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [133] GenomicAlignments_1.32.0 dir.expiry_1.4.0
## [135] plotly_4.10.0 xml2_1.3.3
## [137] ggtree_3.4.0 annotate_1.74.0
## [139] bslib_0.3.1 XVector_0.36.0
## [141] yulab.utils_0.0.4 stringr_1.4.0
## [143] digest_0.6.29 Biostrings_2.64.0
## [145] rmarkdown_2.14 fastmatch_1.1-3
## [147] tidytree_0.3.9 restfulr_0.0.14
## [149] curl_4.3.2 gtools_3.9.2.1
## [151] shiny_1.7.1 Rsamtools_2.12.0
## [153] rjson_0.2.21 lifecycle_1.0.1
## [155] nlme_3.1-157 jsonlite_1.8.0
## [157] viridisLite_0.4.0 limma_3.52.1
## [159] BSgenome_1.64.0 fansi_1.0.3
## [161] pillar_1.7.0 lattice_0.20-45
## [163] plotrix_3.8-2 KEGGREST_1.36.0
## [165] fastmap_1.1.0 httr_1.4.3
## [167] survival_3.3-1 GO.db_3.15.0
## [169] interactiveDisplayBase_1.34.0 glue_1.6.2
## [171] UpSetR_1.4.0 png_0.1-7
## [173] BiocVersion_3.15.2 bit_4.0.4
## [175] sass_0.4.1 ggforce_0.3.3
## [177] stringi_1.7.6 blob_1.2.3
## [179] org.Hs.eg.db_3.15.0 DESeq2_1.36.0
## [181] AnnotationHub_3.4.0 caTools_1.18.2
## [183] memoise_2.0.1 dplyr_1.0.9
## [185] ape_5.6-2