EpiCompare Report

knitr::opts_chunk$set(echo = FALSE)
### Create Output Directory ###
# if save_output = TRUE
if(params$save_output){
  outfile_dir <- paste0(params$output_dir,"/EpiCompare_file")
  if(!dir.exists(outfile_dir)){
    dir.create(outfile_dir, showWarnings = FALSE, recursive = TRUE)
  }
}

#### ------ Prepare genome builds ------ ####
# e.g. genome_build <- list(reference="hg19",peakfiles="hg38",blacklist="hg19")
# or... genome_build <- "hg19"
builds <- prepare_genome_builds(genome_build = params$genome_build)
## Standardise all data to hg19 build 
output_build <- prepare_output_build(params$genome_build_output)

#### ------ Prepare peaklist(s) ------ ####
# and check that the list is named, if not default filenames are used 
peaklist <- prepare_peaklist(peaklist = params$peakfile) 
peaklist <- liftover_grlist(grlist = peaklist, 
                            input_build = builds$peaklist,
                            output_build = output_build)

#### ------ Prepare reference(s) ------ ####
reference <- prepare_reference(reference = params$reference)
reference <- liftover_grlist(grlist = reference, 
                            input_build = builds$reference,
                            output_build = output_build)

#### ------ Prepare blacklist ------ ####
blacklist <- liftover_grlist(grlist = params$blacklist,
                             input_build = builds$blacklist, 
                             output_build = output_build) 

### Standardise peaklist(s) ###
peaklist_tidy <- tidy_peakfile(peaklist = peaklist,
                               blacklist = blacklist)

### Standardise reference(s) ###
# and include in peaklist
reference_tidy <- reference
if (!is.null(reference)){
  reference_tidy <- tidy_peakfile(peaklist = reference,
                                  blacklist = blacklist)
  peaklist_tidy <- c(peaklist_tidy, reference_tidy)
}

### Obtain Genome Annotation ### 
txdb <- check_genome_build(genome_build = output_build)

### Dynamic Figure Height ###  
fig_height <- fig_length(default_size = 7,
                         number_of_items = length(peaklist_tidy),
                         max_items = 10)

EpiCompare compares epigenetic datasets for quality control and benchmarking purposes. The report consists of three sections:

1. General Metrics: Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples.
2. Peak Overlap: Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot.
3. Functional Annotation: Functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.

---

Input Datasets

• Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS
• Total of 49 peak files:

## [1] "File1: C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2"
## [1] "File2: C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2"
## [1] "File3: C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2"
## [1] "File4: C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2"
## [1] "File5: C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2"
## [1] "File6: C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2"
## [1] "File7: C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR"
## [1] "File8: C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR"
## [1] "File9: C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR"
## [1] "File10: C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR"
## [1] "File11: C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File12: C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File13: C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File14: C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File15: C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR"
## [1] "File16: C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR"
## [1] "File17: C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR"
## [1] "File18: C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR"
## [1] "File19: C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR"
## [1] "File20: C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR"
## [1] "File21: C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File22: C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File23: C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File24: C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File25: C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR"
## [1] "File26: C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR"
## [1] "File27: C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR"
## [1] "File28: C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR"
## [1] "File29: C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR"
## [1] "File30: C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR"
## [1] "File31: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1"
## [1] "File32: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2"
## [1] "File33: TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1"
## [1] "File34: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1"
## [1] "File35: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1"
## [1] "File36: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1"
## [1] "File37: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1"
## [1] "File38: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1"
## [1] "File39: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1"
## [1] "File40: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1"
## [1] "File41: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1"
## [1] "File42: TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1"
## [1] "File43: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1"
## [1] "File44: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1"
## [1] "File45: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1"
## [1] "File46: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1"
## [1] "File47: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1"
## [1] "File48: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1"
## [1] "File49: ENCODE_H3K27ac_ENCFF038DDS"

Code

The function call used to create the report.

EpiCompare(peakfiles = list(C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2, C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2, C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2, C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2, C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2, C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2, C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR, C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2, TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1, TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1, ENCODE_H3K27ac_ENCFF038DDS),
           genome_build = hg19, hg38, hg19,
           genome_build_output = hg19,
           blacklist = blacklist,
           picard_files = list(),
           reference = ENCODE_H3K27ac_ENCFF038DDS,
           upset_plot = TRUE,
           stat_plot = TRUE,
           chromHMM_plot = TRUE,
           chromHMM_annotation = "K562",
           chipseeker_plot = TRUE,
           enrichment_plot = TRUE,
           tss_plot = TRUE,
           precision_recall_plot = TRUE,
           interact = TRUE,
           save_output = TRUE,
           output_dir = "/Users/schilder/Desktop/CUT_n_TAG/EpiCompare/ENCODE_H3K27ac_ENCFF038DDS")

---

1. General Metrics

Peak Information

Column Description:

• PeakN before tidy: Total number of peaks including those blacklisted and those in non-standard chromosomes.
• Blacklisted peaks removed (%): Percentage of blacklisted peaks in samples. E.g. ENCODE hg19 blacklist includes regions in the hg19 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment.
• Non-standard peaks removed (%): Percentage of peaks in non-standard and/or mitochondrial chromosomes. Identified using BRGenomics::tidyChromosomes().
  
• PeakN after tidy: Total number of peaks after removing those in blacklisted regions and non-standard chromosomes.

NB: EpiCompare uses filtered peakfiles (i.e. datasets after removing peaks in blacklisted regions and non-standard chromosomes)

## --- Running peak_info() ---

## Done.

	PeakN Before Tidy	Blacklisted Peaks Removed (%)	Non-standard Peaks Removed (%)	PeakN After Tidy
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	28083	2.480	1.91000	26854
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	39607	1.290	0.83600	38766
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	5737	10.300	5.56000	4831
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	197469	0.447	0.42500	195749
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	15973	4.450	2.59000	14851
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	33480	2.340	1.13000	32323
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	7353	6.880	3.10000	6620
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	23328	2.550	1.89000	22293
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	4576	3.540	2.12000	4318
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	6522	4.940	2.61000	6031
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	11122	3.700	2.71000	10410
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	5876	2.420	1.46000	5649
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	4095	5.620	2.59000	3760
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	65725	0.672	0.58700	64898
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	4157	5.390	2.86000	3815
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	9412	4.240	2.89000	8742
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	6706	1.540	0.92500	6542
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	7355	3.300	1.77000	6983
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	74196	0.721	0.60900	73210
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	6509	3.830	2.17000	6120
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	8273	2.040	1.35000	7993
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	6340	2.020	0.99400	6150
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	6285	5.740	2.77000	5751
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	78009	0.356	0.41700	77407
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	7123	3.800	1.95000	6714
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	8315	1.790	1.15000	8071
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	4713	1.950	0.91200	4579
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	4072	7.420	3.56000	3626
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	69593	0.540	0.45700	68900
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	3987	9.180	4.77000	3432
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	61464	0.236	0.01950	61319
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	116419	0.312	0.01030	116056
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	77999	0.333	0.01540	77739
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	68776	0.318	0.01740	68557
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	42087	0.152	0.02850	42023
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	121514	0.238	0.00988	121225
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	103900	0.236	0.01150	103655
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	76027	0.241	0.01580	75844
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	88978	0.249	0.01350	88756
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	69386	0.262	0.01730	69204
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	83023	0.257	0.01450	82810
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	73454	0.317	0.01630	73221
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	66575	0.424	0.01800	66293
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	66193	0.224	0.01810	66045
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	79191	0.516	0.01520	78782
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	86061	0.464	0.01390	85662
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	81669	0.307	0.01470	81418
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	79023	0.248	0.01520	78827

---

Fragment Information

Metrics on fragments is shown only if Picard summary is provided. See manual for help.

Column Description:

• Mapped_Fragments: Number of mapped read pairs in the file.
• Duplication_Rate: Percentage of mapped sequence that is marked as duplicate.
• Unique_Fragments: Number of mapped sequence that is not marked as duplicate.

---

Peak widths

Distribution of peak widths in samples

---

2. Peak Overlap

Percentage Overlap

Percentage of overlapping peaks between samples. Hover over heatmap for percentage values.

N.B. How to interpret heatmap: [Samples in x-axis of heatmap] peaks in [Samples in y-axis of heatmap] peaks

---

Upset Plot

Upset plot of overlapping peaks between samples. See here on how to interpret the plot.

---

Statistical Significance

Depending on the format of the reference file, EpiCompare outputs different plots:

• Reference dataset has BED6+4 format (peak calling performed with MACS2): EpiCompare generates paired boxplot per sample showing the distribution of -log10(q-value) of reference peaks that are overlapping and non-overlapping with the sample dataset.
• Reference dataset does not have BED6+4 format: EpiCompare generates a barplot of percentage of overlapping sample peaks with the reference, coloured by statistical significance (adjusted p-value) of the overlap.

Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS

Keys:

• Overlap: Sample peaks in Reference peaks
• Unique: Sample peaks not in Reference peaks

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Precision-Recall Curves

The first plot shows the balance between precision and recall across multiple peak calling stringency thresholds.

• Precision: Number of sample peaks in reference.
• Recall: Number of reference peaks in sample.

The second plot shows F1 score (a score that combines precision and recall) across the different peak calling calling stringency thresholds.

• F1: 2*(precision*recall) / (precision+recall)

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3. Functional Annotation

3.1 ChromHMM

ChromHMM annotates and characterises peaks into different chromatin states. ChromHMM annotations used in EpiCompare were obtained from here.

• Cell-type annotation file used in this analysis: K562

All samples

ChromHMM annotation of individual samples.

Overlap: Sample peaks in Reference peaks

Percentage of Sample peaks found in Reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query	subject	overlap	total	Percentage	type	peaklist1	peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	16495	26854	61.400	precision	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	30658	38766	79.100	precision	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	3113	4831	64.400	precision	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	1950	195749	0.996	precision	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	12669	14851	85.300	precision	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS	27049	32323	83.700	precision	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5397	6620	81.500	precision	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	12553	22293	56.300	precision	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3973	4318	92.000	precision	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5577	6031	92.500	precision	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7075	10410	68.000	precision	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5255	5649	93.000	precision	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3260	3760	86.700	precision	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	251	64898	0.387	precision	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3382	3815	88.700	precision	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5728	8742	65.500	precision	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6238	6542	95.400	precision	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6232	6983	89.200	precision	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	1783	73210	2.440	precision	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5563	6120	90.900	precision	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7130	7993	89.200	precision	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5604	6150	91.100	precision	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	4811	5751	83.700	precision	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	328	77407	0.424	precision	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6272	6714	93.400	precision	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7170	8071	88.800	precision	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	4260	4579	93.000	precision	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3156	3626	87.000	precision	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	168	68900	0.244	precision	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	2934	3432	85.500	precision	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS	26507	61319	43.200	precision	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS	23479	116056	20.200	precision	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	24195	77739	31.100	precision	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	24675	68557	36.000	precision	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS	21787	42023	51.800	precision	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS	22757	121225	18.800	precision	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS	24446	103655	23.600	precision	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS	24904	75844	32.800	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS	26534	88756	29.900	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS	28154	69204	40.700	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS	24770	82810	29.900	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS	26200	73221	35.800	precision	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS	516	66293	0.778	precision	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS	428	66045	0.648	precision	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS	795	78782	1.010	precision	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS	1058	85662	1.240	precision	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS	1065	81418	1.310	precision	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS	1038	78827	1.320	precision	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	52544	52544	100.000	precision	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	13692	52544	26.100	recall	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	28569	52544	54.400	recall	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	2624	52544	4.990	recall	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	1624	52544	3.090	recall	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	10172	52544	19.400	recall	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	22898	52544	43.600	recall	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	6121	52544	11.600	recall	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	14780	52544	28.100	recall	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	5246	52544	9.980	recall	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	7031	52544	13.400	recall	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	8289	52544	15.800	recall	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	7133	52544	13.600	recall	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	4102	52544	7.810	recall	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	286	52544	0.544	recall	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	4198	52544	7.990	recall	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	6544	52544	12.500	recall	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	9620	52544	18.300	recall	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	7986	52544	15.200	recall	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	1939	52544	3.690	recall	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	7088	52544	13.500	recall	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	9269	52544	17.600	recall	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	7156	52544	13.600	recall	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	5633	52544	10.700	recall	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	385	52544	0.733	recall	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	8064	52544	15.300	recall	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	9242	52544	17.600	recall	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	5730	52544	10.900	recall	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	3635	52544	6.920	recall	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	195	52544	0.371	recall	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	3264	52544	6.210	recall	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	40547	52544	77.200	recall	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	50814	52544	96.700	recall	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	48428	52544	92.200	recall	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	46439	52544	88.400	recall	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	20232	52544	38.500	recall	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	50728	52544	96.500	recall	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	48955	52544	93.200	recall	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	43979	52544	83.700	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	44523	52544	84.700	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	37651	52544	71.700	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	45750	52544	87.100	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	43390	52544	82.600	recall	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	653	52544	1.240	recall	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	527	52544	1.000	recall	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	1045	52544	1.990	recall	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	1461	52544	2.780	recall	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	1419	52544	2.700	recall	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	1341	52544	2.550	recall	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	52544	52544	100.000	recall	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of sample peaks found in reference peaks.

Overlap: Reference peaks in Sample peaks

Percentage of Reference peaks found in Sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query	subject	overlap	total	Percentage	type	peaklist1	peaklist2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	13692	52544	26.100	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	28569	52544	54.400	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	2624	52544	4.990	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	1624	52544	3.090	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	10172	52544	19.400	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	22898	52544	43.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	6121	52544	11.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	14780	52544	28.100	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	5246	52544	9.980	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	7031	52544	13.400	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	8289	52544	15.800	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	7133	52544	13.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	4102	52544	7.810	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	286	52544	0.544	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	4198	52544	7.990	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	6544	52544	12.500	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	9620	52544	18.300	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	7986	52544	15.200	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	1939	52544	3.690	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	7088	52544	13.500	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	9269	52544	17.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	7156	52544	13.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	5633	52544	10.700	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	385	52544	0.733	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	8064	52544	15.300	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	9242	52544	17.600	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	5730	52544	10.900	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	3635	52544	6.920	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	195	52544	0.371	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	3264	52544	6.210	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	40547	52544	77.200	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	50814	52544	96.700	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	48428	52544	92.200	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	46439	52544	88.400	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	20232	52544	38.500	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	50728	52544	96.500	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	48955	52544	93.200	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	43979	52544	83.700	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	44523	52544	84.700	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	37651	52544	71.700	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	45750	52544	87.100	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	43390	52544	82.600	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	653	52544	1.240	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	527	52544	1.000	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	1045	52544	1.990	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	1461	52544	2.780	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	1419	52544	2.700	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	1341	52544	2.550	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	52544	52544	100.000	precision	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	16495	26854	61.400	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	30658	38766	79.100	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	3113	4831	64.400	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	1950	195749	0.996	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	12669	14851	85.300	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS	27049	32323	83.700	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5397	6620	81.500	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	12553	22293	56.300	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3973	4318	92.000	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5577	6031	92.500	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7075	10410	68.000	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5255	5649	93.000	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3260	3760	86.700	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	251	64898	0.387	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3382	3815	88.700	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5728	8742	65.500	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6238	6542	95.400	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6232	6983	89.200	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	1783	73210	2.440	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5563	6120	90.900	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7130	7993	89.200	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	5604	6150	91.100	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	4811	5751	83.700	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	328	77407	0.424	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	6272	6714	93.400	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	7170	8071	88.800	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	4260	4579	93.000	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3156	3626	87.000	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	168	68900	0.244	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	2934	3432	85.500	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS	26507	61319	43.200	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS	23479	116056	20.200	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	24195	77739	31.100	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	24675	68557	36.000	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS	21787	42023	51.800	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS	22757	121225	18.800	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS	24446	103655	23.600	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS	24904	75844	32.800	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS	26534	88756	29.900	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS	28154	69204	40.700	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS	24770	82810	29.900	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS	26200	73221	35.800	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS	516	66293	0.778	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS	428	66045	0.648	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS	795	78782	1.010	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS	1058	85662	1.240	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS	1065	81418	1.310	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS	1038	78827	1.320	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	52544	52544	100.000	recall	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of reference peaks found in sample peaks.

Unique: Sample peaks not in Reference peaks

Percentage of sample peaks not found in reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query	subject	overlap	total	Percentage	type	peaklist1	peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	10359	26854	38.60	precision	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	8108	38766	20.90	precision	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	1718	4831	35.60	precision	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	193799	195749	99.00	precision	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	2182	14851	14.70	precision	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS	5274	32323	16.30	precision	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	1223	6620	18.50	precision	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	9740	22293	43.70	precision	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	345	4318	7.99	precision	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	454	6031	7.53	precision	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3335	10410	32.00	precision	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	394	5649	6.97	precision	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	500	3760	13.30	precision	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	64647	64898	99.60	precision	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	433	3815	11.30	precision	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3014	8742	34.50	precision	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	304	6542	4.65	precision	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	751	6983	10.80	precision	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	71427	73210	97.60	precision	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	557	6120	9.10	precision	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	863	7993	10.80	precision	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	546	6150	8.88	precision	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	940	5751	16.30	precision	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	77079	77407	99.60	precision	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	442	6714	6.58	precision	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	901	8071	11.20	precision	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	319	4579	6.97	precision	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	470	3626	13.00	precision	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	68732	68900	99.80	precision	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	498	3432	14.50	precision	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS	34812	61319	56.80	precision	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS	92577	116056	79.80	precision	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	53544	77739	68.90	precision	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	43882	68557	64.00	precision	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS	20236	42023	48.20	precision	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS	98468	121225	81.20	precision	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS	79209	103655	76.40	precision	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS	50940	75844	67.20	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS	62222	88756	70.10	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS	41050	69204	59.30	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS	58040	82810	70.10	precision	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS	47021	73221	64.20	precision	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS	65777	66293	99.20	precision	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS	65617	66045	99.40	precision	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS	77987	78782	99.00	precision	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS	84604	85662	98.80	precision	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS	80353	81418	98.70	precision	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS	77789	78827	98.70	precision	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	0	52544	0.00	precision	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	38852	52544	73.90	recall	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	23975	52544	45.60	recall	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	49920	52544	95.00	recall	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	50920	52544	96.90	recall	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	42372	52544	80.60	recall	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	29646	52544	56.40	recall	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	46423	52544	88.40	recall	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	37764	52544	71.90	recall	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	47298	52544	90.00	recall	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	45513	52544	86.60	recall	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	44255	52544	84.20	recall	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	45411	52544	86.40	recall	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	48442	52544	92.20	recall	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	52258	52544	99.50	recall	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	48346	52544	92.00	recall	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	46000	52544	87.50	recall	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	42924	52544	81.70	recall	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	44558	52544	84.80	recall	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	50605	52544	96.30	recall	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	45456	52544	86.50	recall	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	43275	52544	82.40	recall	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	45388	52544	86.40	recall	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	46911	52544	89.30	recall	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	52159	52544	99.30	recall	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	44480	52544	84.70	recall	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	43302	52544	82.40	recall	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	46814	52544	89.10	recall	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	48909	52544	93.10	recall	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	52349	52544	99.60	recall	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	49280	52544	93.80	recall	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	11997	52544	22.80	recall	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	1730	52544	3.29	recall	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	4116	52544	7.83	recall	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	6105	52544	11.60	recall	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	32312	52544	61.50	recall	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	1816	52544	3.46	recall	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	3589	52544	6.83	recall	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	8565	52544	16.30	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	8021	52544	15.30	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	14893	52544	28.30	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	6794	52544	12.90	recall	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	9154	52544	17.40	recall	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	51891	52544	98.80	recall	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	52017	52544	99.00	recall	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	51499	52544	98.00	recall	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	51083	52544	97.20	recall	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	51125	52544	97.30	recall	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	51203	52544	97.40	recall	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	0	52544	0.00	recall	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of sample peaks not found in reference peaks.

Unique: Reference peaks not in Sample peaks

Percentage of reference peaks not found in sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query	subject	overlap	total	Percentage	type	peaklist1	peaklist2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	38852	52544	73.90	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	23975	52544	45.60	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	49920	52544	95.00	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	50920	52544	96.90	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	42372	52544	80.60	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	29646	52544	56.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	46423	52544	88.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	37764	52544	71.90	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	47298	52544	90.00	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	45513	52544	86.60	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	44255	52544	84.20	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	45411	52544	86.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	48442	52544	92.20	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	52258	52544	99.50	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	48346	52544	92.00	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	46000	52544	87.50	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	42924	52544	81.70	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	44558	52544	84.80	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	50605	52544	96.30	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	45456	52544	86.50	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	43275	52544	82.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	45388	52544	86.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	46911	52544	89.30	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	52159	52544	99.30	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	44480	52544	84.70	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	43302	52544	82.40	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	46814	52544	89.10	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	48909	52544	93.10	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	52349	52544	99.60	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	49280	52544	93.80	precision	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	11997	52544	22.80	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	1730	52544	3.29	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	4116	52544	7.83	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	6105	52544	11.60	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	32312	52544	61.50	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	1816	52544	3.46	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	3589	52544	6.83	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	8565	52544	16.30	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	8021	52544	15.30	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	14893	52544	28.30	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	6794	52544	12.90	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	9154	52544	17.40	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	51891	52544	98.80	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	52017	52544	99.00	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	51499	52544	98.00	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	51083	52544	97.20	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	51125	52544	97.30	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	51203	52544	97.40	precision	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	0	52544	0.00	precision	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	10359	26854	38.60	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	8108	38766	20.90	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	1718	4831	35.60	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	193799	195749	99.00	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2	ENCODE_H3K27ac_ENCFF038DDS	2182	14851	14.70	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2	ENCODE_H3K27ac_ENCFF038DDS	5274	32323	16.30	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	1223	6620	18.50	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	9740	22293	43.70	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	345	4318	7.99	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR	ENCODE_H3K27ac_ENCFF038DDS	454	6031	7.53	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3335	10410	32.00	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	394	5649	6.97	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	500	3760	13.30	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	64647	64898	99.60	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	433	3815	11.30	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	3014	8742	34.50	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	304	6542	4.65	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	751	6983	10.80	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	71427	73210	97.60	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	557	6120	9.10	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	863	7993	10.80	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	546	6150	8.88	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	940	5751	16.30	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	77079	77407	99.60	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	442	6714	6.58	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	901	8071	11.20	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	319	4579	6.97	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	470	3626	13.00	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	68732	68900	99.80	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR	ENCODE_H3K27ac_ENCFF038DDS	498	3432	14.50	recall	ENCODE_H3K27ac_ENCFF038DDS	C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1	ENCODE_H3K27ac_ENCFF038DDS	34812	61319	56.80	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2	ENCODE_H3K27ac_ENCFF038DDS	92577	116056	79.80	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	53544	77739	68.90	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1	ENCODE_H3K27ac_ENCFF038DDS	43882	68557	64.00	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1	ENCODE_H3K27ac_ENCFF038DDS	20236	42023	48.20	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1	ENCODE_H3K27ac_ENCFF038DDS	98468	121225	81.20	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1	ENCODE_H3K27ac_ENCFF038DDS	79209	103655	76.40	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1	ENCODE_H3K27ac_ENCFF038DDS	50940	75844	67.20	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1	ENCODE_H3K27ac_ENCFF038DDS	62222	88756	70.10	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1	ENCODE_H3K27ac_ENCFF038DDS	41050	69204	59.30	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1	ENCODE_H3K27ac_ENCFF038DDS	58040	82810	70.10	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1	ENCODE_H3K27ac_ENCFF038DDS	47021	73221	64.20	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1	ENCODE_H3K27ac_ENCFF038DDS	65777	66293	99.20	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1	ENCODE_H3K27ac_ENCFF038DDS	65617	66045	99.40	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1	ENCODE_H3K27ac_ENCFF038DDS	77987	78782	99.00	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1	ENCODE_H3K27ac_ENCFF038DDS	84604	85662	98.80	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1	ENCODE_H3K27ac_ENCFF038DDS	80353	81418	98.70	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1	ENCODE_H3K27ac_ENCFF038DDS	77789	78827	98.70	recall	ENCODE_H3K27ac_ENCFF038DDS	TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS	0	52544	0.00	recall	ENCODE_H3K27ac_ENCFF038DDS	ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of reference peaks not found in sample peaks.

---

3.2 ChIPseeker

EpiCompare uses ChIPseeker::annotatePeak() to annotate peaks with the nearest gene and genomic regions where the peak is located. The peaks are annotated with genes taken from human genome annotations (hg19 or hg38) provided by Bioconductor.

---

3.3 Functional Enrichment Analysis

EpiCompare performs KEGG pathway and GO enrichment analysis using clusterProfiler. ChIPseeker::annotatePeak() is first used to assign peaks to nearest genes. Biological themes amongst the genes are identified using ontologies (KEGG and GO). The peaks are annotated with genes taken from annotations of human genome (hg19 or hg38) provided by Bioconductor.

---

KEGG

---

GO

---

3.4 Peak Frequency around TSS

This plots peaks that are mapping to transcriptional start sites (TSS). TSS regions are defined as the flanking sequence of the TSS sites. The frequency of peaks in downstream (-3000bp) and upstream (+3000bp) of TSS is plotted. Faint color line around the main frequency line represents the 95% confidence interval estimated by bootstrap method.

## >> Running bootstrapping for tag matrix...        2022-06-08 16:11:06 
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## >> Running bootstrapping for tag matrix...        2022-06-08 16:59:46 
## >> Running bootstrapping for tag matrix...        2022-06-08 17:00:49 
## >> Running bootstrapping for tag matrix...        2022-06-08 17:01:38 
## >> Running bootstrapping for tag matrix...        2022-06-08 17:03:28

4. Session Info

## R version 4.2.0 (2022-04-22)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.3.1
## 
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] rtracklayer_1.56.0   GenomicRanges_1.48.0 GenomeInfoDb_1.32.2  IRanges_2.30.0       S4Vectors_0.34.0    
## [6] BiocGenerics_0.42.0  EpiCompare_0.99.20   PeakyFinders_0.99.1 
## 
## loaded via a namespace (and not attached):
##   [1] utf8_1.2.2                              reticulate_1.25                        
##   [3] R.utils_2.11.0                          tidyselect_1.1.2                       
##   [5] htmlwidgets_1.5.4                       RSQLite_2.2.14                         
##   [7] AnnotationDbi_1.58.0                    grid_4.2.0                             
##   [9] BiocParallel_1.30.3                     scatterpie_0.1.7                       
##  [11] munsell_0.5.0                           codetools_0.2-18                       
##  [13] colorspace_2.0-3                        GOSemSim_2.22.0                        
##  [15] Biobase_2.56.0                          filelock_1.0.2                         
##  [17] highr_0.9                               knitr_1.39                             
##  [19] MACSr_1.4.0                             rstudioapi_0.13                        
##  [21] DOSE_3.22.0                             labeling_0.4.2                         
##  [23] MatrixGenerics_1.8.0                    GenomeInfoDbData_1.2.8                 
##  [25] polyclip_1.10-0                         seqPattern_1.28.0                      
##  [27] bit64_4.0.5                             farver_2.1.0                           
##  [29] downloader_0.4                          rprojroot_2.0.3                        
##  [31] basilisk_1.8.0                          vctrs_0.4.1                            
##  [33] treeio_1.20.0                           generics_0.1.2                         
##  [35] xfun_0.31                               BiocFileCache_2.4.0                    
##  [37] regioneR_1.28.0                         R6_2.5.1                               
##  [39] graphlayouts_0.8.0                      locfit_1.5-9.5                         
##  [41] bitops_1.0-7                            BRGenomics_1.8.0                       
##  [43] cachem_1.0.6                            fgsea_1.22.0                           
##  [45] gridGraphics_0.5-1                      DelayedArray_0.22.0                    
##  [47] assertthat_0.2.1                        vroom_1.5.7                            
##  [49] promises_1.2.0.1                        BiocIO_1.6.0                           
##  [51] scales_1.2.0                            ggraph_2.0.5                           
##  [53] enrichplot_1.16.1                       gtable_0.3.0                           
##  [55] tidygraph_1.2.1                         rlang_1.0.2                            
##  [57] genefilter_1.78.0                       splines_4.2.0                          
##  [59] lazyeval_0.2.2                          impute_1.70.0                          
##  [61] GEOquery_2.64.2                         BiocManager_1.30.18                    
##  [63] yaml_2.3.5                              reshape2_1.4.4                         
##  [65] crosstalk_1.2.0                         GenomicFeatures_1.48.3                 
##  [67] httpuv_1.6.5                            qvalue_2.28.0                          
##  [69] clusterProfiler_4.4.2                   tools_4.2.0                            
##  [71] gridBase_0.4-7                          ggplotify_0.1.0                        
##  [73] ggplot2_3.3.6                           ellipsis_0.3.2                         
##  [75] gplots_3.1.3                            jquerylib_0.1.4                        
##  [77] RColorBrewer_1.1-3                      Rcpp_1.0.8.3                           
##  [79] plyr_1.8.7                              progress_1.2.2                         
##  [81] zlibbioc_1.42.0                         purrr_0.3.4                            
##  [83] RCurl_1.98-1.6                          basilisk.utils_1.8.0                   
##  [85] prettyunits_1.1.1                       viridis_0.6.2                          
##  [87] SummarizedExperiment_1.26.1             ggrepel_0.9.1                          
##  [89] here_1.0.1                              magrittr_2.0.3                         
##  [91] data.table_1.14.2                       DO.db_2.9                              
##  [93] matrixStats_0.62.0                      hms_1.1.1                              
##  [95] patchwork_1.1.1                         mime_0.12                              
##  [97] evaluate_0.15                           xtable_1.8-4                           
##  [99] XML_3.99-0.9                            gridExtra_2.3                          
## [101] compiler_4.2.0                          biomaRt_2.52.0                         
## [103] tibble_3.1.7                            KernSmooth_2.23-20                     
## [105] crayon_1.5.1                            shadowtext_0.1.2                       
## [107] R.oo_1.24.0                             htmltools_0.5.2                        
## [109] ggfun_0.0.6                             later_1.3.0                            
## [111] tzdb_0.3.0                              tidyr_1.2.0                            
## [113] geneplotter_1.74.0                      aplot_0.1.6                            
## [115] DBI_1.1.2                               genomation_1.28.0                      
## [117] tweenr_1.0.2                            ExperimentHub_2.4.0                    
## [119] ChIPseeker_1.32.0                       dbplyr_2.2.0                           
## [121] MASS_7.3-57                             rappdirs_0.3.3                         
## [123] boot_1.3-28                             Matrix_1.4-1                           
## [125] readr_2.1.2                             piggyback_0.1.3                        
## [127] cli_3.3.0                               R.methodsS3_1.8.1                      
## [129] parallel_4.2.0                          igraph_1.3.1                           
## [131] pkgconfig_2.0.3                         TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [133] GenomicAlignments_1.32.0                dir.expiry_1.4.0                       
## [135] plotly_4.10.0                           xml2_1.3.3                             
## [137] ggtree_3.4.0                            annotate_1.74.0                        
## [139] bslib_0.3.1                             XVector_0.36.0                         
## [141] yulab.utils_0.0.4                       stringr_1.4.0                          
## [143] digest_0.6.29                           Biostrings_2.64.0                      
## [145] rmarkdown_2.14                          fastmatch_1.1-3                        
## [147] tidytree_0.3.9                          restfulr_0.0.14                        
## [149] curl_4.3.2                              gtools_3.9.2.1                         
## [151] shiny_1.7.1                             Rsamtools_2.12.0                       
## [153] rjson_0.2.21                            lifecycle_1.0.1                        
## [155] nlme_3.1-157                            jsonlite_1.8.0                         
## [157] viridisLite_0.4.0                       limma_3.52.1                           
## [159] BSgenome_1.64.0                         fansi_1.0.3                            
## [161] pillar_1.7.0                            lattice_0.20-45                        
## [163] plotrix_3.8-2                           KEGGREST_1.36.0                        
## [165] fastmap_1.1.0                           httr_1.4.3                             
## [167] survival_3.3-1                          GO.db_3.15.0                           
## [169] interactiveDisplayBase_1.34.0           glue_1.6.2                             
## [171] UpSetR_1.4.0                            png_0.1-7                              
## [173] BiocVersion_3.15.2                      bit_4.0.4                              
## [175] sass_0.4.1                              ggforce_0.3.3                          
## [177] stringi_1.7.6                           blob_1.2.3                             
## [179] org.Hs.eg.db_3.15.0                     DESeq2_1.36.0                          
## [181] AnnotationHub_3.4.0                     caTools_1.18.2                         
## [183] memoise_2.0.1                           dplyr_1.0.9                            
## [185] ape_5.6-2