knitr::opts_chunk$set(echo = FALSE)
### Create Output Directory ###
# if save_output = TRUE
if(params$save_output){
  outfile_dir <- paste0(params$output_dir,"/EpiCompare_file")
  if(!dir.exists(outfile_dir)){
    dir.create(outfile_dir, showWarnings = FALSE, recursive = TRUE)
  }
}

#### ------ Prepare genome builds ------ ####
# e.g. genome_build <- list(reference="hg19",peakfiles="hg38",blacklist="hg19")
# or... genome_build <- "hg19"
builds <- prepare_genome_builds(genome_build = params$genome_build)
## Standardise all data to hg19 build 
output_build <- prepare_output_build(params$genome_build_output)

#### ------ Prepare peaklist(s) ------ ####
# and check that the list is named, if not default filenames are used 
peaklist <- prepare_peaklist(peaklist = params$peakfile) 
peaklist <- liftover_grlist(grlist = peaklist, 
                            input_build = builds$peaklist,
                            output_build = output_build)

#### ------ Prepare reference(s) ------ ####
reference <- prepare_reference(reference = params$reference)
reference <- liftover_grlist(grlist = reference, 
                            input_build = builds$reference,
                            output_build = output_build)

#### ------ Prepare blacklist ------ ####
blacklist <- liftover_grlist(grlist = params$blacklist,
                             input_build = builds$blacklist, 
                             output_build = output_build) 

### Standardise peaklist(s) ###
peaklist_tidy <- tidy_peakfile(peaklist = peaklist,
                               blacklist = blacklist)

### Standardise reference(s) ###
# and include in peaklist
reference_tidy <- reference
if (!is.null(reference)){
  reference_tidy <- tidy_peakfile(peaklist = reference,
                                  blacklist = blacklist)
  peaklist_tidy <- c(peaklist_tidy, reference_tidy)
}

### Obtain Genome Annotation ### 
txdb <- check_genome_build(genome_build = output_build)

### Dynamic Figure Height ###  
fig_height <- fig_length(default_size = 7,
                         number_of_items = length(peaklist_tidy),
                         max_items = 10)

EpiCompare compares epigenetic datasets for quality control and benchmarking purposes. The report consists of three sections:

  1. General Metrics: Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples.
  2. Peak Overlap: Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot.
  3. Functional Annotation: Functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.

Input Datasets
  • Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS
  • Total of 49 peak files:
## [1] "File1: C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2"
## [1] "File2: C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2"
## [1] "File3: C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2"
## [1] "File4: C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2"
## [1] "File5: C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2"
## [1] "File6: C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2"
## [1] "File7: C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR"
## [1] "File8: C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR"
## [1] "File9: C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR"
## [1] "File10: C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR"
## [1] "File11: C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File12: C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File13: C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File14: C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File15: C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR"
## [1] "File16: C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR"
## [1] "File17: C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR"
## [1] "File18: C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR"
## [1] "File19: C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR"
## [1] "File20: C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR"
## [1] "File21: C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File22: C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File23: C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File24: C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File25: C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR"
## [1] "File26: C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR"
## [1] "File27: C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR"
## [1] "File28: C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR"
## [1] "File29: C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR"
## [1] "File30: C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR"
## [1] "File31: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1"
## [1] "File32: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2"
## [1] "File33: TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1"
## [1] "File34: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1"
## [1] "File35: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1"
## [1] "File36: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1"
## [1] "File37: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1"
## [1] "File38: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1"
## [1] "File39: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1"
## [1] "File40: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1"
## [1] "File41: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1"
## [1] "File42: TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1"
## [1] "File43: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1"
## [1] "File44: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1"
## [1] "File45: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1"
## [1] "File46: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1"
## [1] "File47: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1"
## [1] "File48: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1"
## [1] "File49: ENCODE_H3K27ac_ENCFF038DDS"
Code

The function call used to create the report.

EpiCompare(peakfiles = list(C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2, C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2, C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2, C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2, C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2, C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2, C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR, C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2, TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1, TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1, ENCODE_H3K27ac_ENCFF038DDS),
           genome_build = hg19, hg38, hg19,
           genome_build_output = hg19,
           blacklist = blacklist,
           picard_files = list(),
           reference = ENCODE_H3K27ac_ENCFF038DDS,
           upset_plot = TRUE,
           stat_plot = TRUE,
           chromHMM_plot = TRUE,
           chromHMM_annotation = "K562",
           chipseeker_plot = TRUE,
           enrichment_plot = TRUE,
           tss_plot = TRUE,
           precision_recall_plot = TRUE,
           interact = TRUE,
           save_output = TRUE,
           output_dir = "/Users/schilder/Desktop/CUT_n_TAG/EpiCompare/ENCODE_H3K27ac_ENCFF038DDS")

1. General Metrics

Peak Information

Column Description:

  • PeakN before tidy: Total number of peaks including those blacklisted and those in non-standard chromosomes.
  • Blacklisted peaks removed (%): Percentage of blacklisted peaks in samples. E.g. ENCODE hg19 blacklist includes regions in the hg19 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment.
  • Non-standard peaks removed (%): Percentage of peaks in non-standard and/or mitochondrial chromosomes. Identified using BRGenomics::tidyChromosomes().
  • PeakN after tidy: Total number of peaks after removing those in blacklisted regions and non-standard chromosomes.

NB: EpiCompare uses filtered peakfiles (i.e. datasets after removing peaks in blacklisted regions and non-standard chromosomes)


## --- Running peak_info() ---
## Done.
PeakN Before Tidy Blacklisted Peaks Removed (%) Non-standard Peaks Removed (%) PeakN After Tidy
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 28083 2.480 1.91000 26854
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 39607 1.290 0.83600 38766
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 5737 10.300 5.56000 4831
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 197469 0.447 0.42500 195749
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 15973 4.450 2.59000 14851
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 33480 2.340 1.13000 32323
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 7353 6.880 3.10000 6620
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 23328 2.550 1.89000 22293
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 4576 3.540 2.12000 4318
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 6522 4.940 2.61000 6031
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 11122 3.700 2.71000 10410
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 5876 2.420 1.46000 5649
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 4095 5.620 2.59000 3760
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 65725 0.672 0.58700 64898
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 4157 5.390 2.86000 3815
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 9412 4.240 2.89000 8742
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 6706 1.540 0.92500 6542
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 7355 3.300 1.77000 6983
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 74196 0.721 0.60900 73210
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 6509 3.830 2.17000 6120
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 8273 2.040 1.35000 7993
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 6340 2.020 0.99400 6150
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 6285 5.740 2.77000 5751
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 78009 0.356 0.41700 77407
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 7123 3.800 1.95000 6714
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 8315 1.790 1.15000 8071
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 4713 1.950 0.91200 4579
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 4072 7.420 3.56000 3626
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 69593 0.540 0.45700 68900
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 3987 9.180 4.77000 3432
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 61464 0.236 0.01950 61319
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 116419 0.312 0.01030 116056
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 77999 0.333 0.01540 77739
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 68776 0.318 0.01740 68557
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 42087 0.152 0.02850 42023
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 121514 0.238 0.00988 121225
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 103900 0.236 0.01150 103655
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 76027 0.241 0.01580 75844
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 88978 0.249 0.01350 88756
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 69386 0.262 0.01730 69204
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 83023 0.257 0.01450 82810
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 73454 0.317 0.01630 73221
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 66575 0.424 0.01800 66293
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 66193 0.224 0.01810 66045
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 79191 0.516 0.01520 78782
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 86061 0.464 0.01390 85662
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 81669 0.307 0.01470 81418
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 79023 0.248 0.01520 78827

Fragment Information

Metrics on fragments is shown only if Picard summary is provided. See manual for help.

Column Description:

  • Mapped_Fragments: Number of mapped read pairs in the file.
  • Duplication_Rate: Percentage of mapped sequence that is marked as duplicate.
  • Unique_Fragments: Number of mapped sequence that is not marked as duplicate.



Peak widths

Distribution of peak widths in samples



2. Peak Overlap

Percentage Overlap

Percentage of overlapping peaks between samples. Hover over heatmap for percentage values.

N.B. How to interpret heatmap: [Samples in x-axis of heatmap] peaks in [Samples in y-axis of heatmap] peaks



Upset Plot

Upset plot of overlapping peaks between samples. See here on how to interpret the plot.


Statistical Significance

Depending on the format of the reference file, EpiCompare outputs different plots:

  • Reference dataset has BED6+4 format (peak calling performed with MACS2): EpiCompare generates paired boxplot per sample showing the distribution of -log10(q-value) of reference peaks that are overlapping and non-overlapping with the sample dataset.
  • Reference dataset does not have BED6+4 format: EpiCompare generates a barplot of percentage of overlapping sample peaks with the reference, coloured by statistical significance (adjusted p-value) of the overlap.

Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS

Keys:

  • Overlap: Sample peaks in Reference peaks
  • Unique: Sample peaks not in Reference peaks



Precision-Recall Curves

The first plot shows the balance between precision and recall across multiple peak calling stringency thresholds.

  • Precision: Number of sample peaks in reference.
  • Recall: Number of reference peaks in sample.

The second plot shows F1 score (a score that combines precision and recall) across the different peak calling calling stringency thresholds.

  • F1: 2*(precision*recall) / (precision+recall)


3. Functional Annotation

3.1 ChromHMM

ChromHMM annotates and characterises peaks into different chromatin states. ChromHMM annotations used in EpiCompare were obtained from here.

  • Cell-type annotation file used in this analysis: K562

All samples

ChromHMM annotation of individual samples.

Overlap: Sample peaks in Reference peaks

Percentage of Sample peaks found in Reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query subject overlap total Percentage type peaklist1 peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 16495 26854 61.400 precision C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 30658 38766 79.100 precision C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 3113 4831 64.400 precision C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 1950 195749 0.996 precision C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 12669 14851 85.300 precision C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS 27049 32323 83.700 precision C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 5397 6620 81.500 precision C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 12553 22293 56.300 precision C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 3973 4318 92.000 precision C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 5577 6031 92.500 precision C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7075 10410 68.000 precision C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5255 5649 93.000 precision C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3260 3760 86.700 precision C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 251 64898 0.387 precision C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3382 3815 88.700 precision C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5728 8742 65.500 precision C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6238 6542 95.400 precision C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6232 6983 89.200 precision C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 1783 73210 2.440 precision C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5563 6120 90.900 precision C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7130 7993 89.200 precision C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5604 6150 91.100 precision C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 4811 5751 83.700 precision C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 328 77407 0.424 precision C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6272 6714 93.400 precision C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7170 8071 88.800 precision C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 4260 4579 93.000 precision C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3156 3626 87.000 precision C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 168 68900 0.244 precision C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 2934 3432 85.500 precision C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS 26507 61319 43.200 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS 23479 116056 20.200 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 24195 77739 31.100 precision TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 24675 68557 36.000 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS 21787 42023 51.800 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS 22757 121225 18.800 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS 24446 103655 23.600 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS 24904 75844 32.800 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS 26534 88756 29.900 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS 28154 69204 40.700 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS 24770 82810 29.900 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS 26200 73221 35.800 precision TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS 516 66293 0.778 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS 428 66045 0.648 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS 795 78782 1.010 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS 1058 85662 1.240 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS 1065 81418 1.310 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS 1038 78827 1.320 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 52544 52544 100.000 precision ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 13692 52544 26.100 recall C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 28569 52544 54.400 recall C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 2624 52544 4.990 recall C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 1624 52544 3.090 recall C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 10172 52544 19.400 recall C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 22898 52544 43.600 recall C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 6121 52544 11.600 recall C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 14780 52544 28.100 recall C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 5246 52544 9.980 recall C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 7031 52544 13.400 recall C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 8289 52544 15.800 recall C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 7133 52544 13.600 recall C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 4102 52544 7.810 recall C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 286 52544 0.544 recall C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 4198 52544 7.990 recall C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 6544 52544 12.500 recall C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 9620 52544 18.300 recall C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 7986 52544 15.200 recall C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 1939 52544 3.690 recall C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 7088 52544 13.500 recall C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 9269 52544 17.600 recall C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 7156 52544 13.600 recall C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 5633 52544 10.700 recall C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 385 52544 0.733 recall C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 8064 52544 15.300 recall C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 9242 52544 17.600 recall C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 5730 52544 10.900 recall C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 3635 52544 6.920 recall C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 195 52544 0.371 recall C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 3264 52544 6.210 recall C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 40547 52544 77.200 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 50814 52544 96.700 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 48428 52544 92.200 recall TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 46439 52544 88.400 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 20232 52544 38.500 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 50728 52544 96.500 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 48955 52544 93.200 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 43979 52544 83.700 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 44523 52544 84.700 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 37651 52544 71.700 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 45750 52544 87.100 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 43390 52544 82.600 recall TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 653 52544 1.240 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 527 52544 1.000 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 1045 52544 1.990 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 1461 52544 2.780 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 1419 52544 2.700 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 1341 52544 2.550 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 52544 52544 100.000 recall ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of sample peaks found in reference peaks.

Overlap: Reference peaks in Sample peaks

Percentage of Reference peaks found in Sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query subject overlap total Percentage type peaklist1 peaklist2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 13692 52544 26.100 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 28569 52544 54.400 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 2624 52544 4.990 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 1624 52544 3.090 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 10172 52544 19.400 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 22898 52544 43.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 6121 52544 11.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 14780 52544 28.100 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 5246 52544 9.980 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 7031 52544 13.400 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 8289 52544 15.800 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 7133 52544 13.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 4102 52544 7.810 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 286 52544 0.544 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 4198 52544 7.990 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 6544 52544 12.500 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 9620 52544 18.300 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 7986 52544 15.200 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 1939 52544 3.690 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 7088 52544 13.500 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 9269 52544 17.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 7156 52544 13.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 5633 52544 10.700 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 385 52544 0.733 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 8064 52544 15.300 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 9242 52544 17.600 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 5730 52544 10.900 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 3635 52544 6.920 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 195 52544 0.371 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 3264 52544 6.210 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 40547 52544 77.200 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 50814 52544 96.700 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 48428 52544 92.200 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 46439 52544 88.400 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 20232 52544 38.500 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 50728 52544 96.500 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 48955 52544 93.200 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 43979 52544 83.700 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 44523 52544 84.700 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 37651 52544 71.700 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 45750 52544 87.100 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 43390 52544 82.600 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 653 52544 1.240 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 527 52544 1.000 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 1045 52544 1.990 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 1461 52544 2.780 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 1419 52544 2.700 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 1341 52544 2.550 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 52544 52544 100.000 precision ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 16495 26854 61.400 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 30658 38766 79.100 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 3113 4831 64.400 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 1950 195749 0.996 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 12669 14851 85.300 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS 27049 32323 83.700 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 5397 6620 81.500 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 12553 22293 56.300 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 3973 4318 92.000 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 5577 6031 92.500 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7075 10410 68.000 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5255 5649 93.000 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3260 3760 86.700 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 251 64898 0.387 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3382 3815 88.700 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5728 8742 65.500 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6238 6542 95.400 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6232 6983 89.200 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 1783 73210 2.440 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5563 6120 90.900 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7130 7993 89.200 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 5604 6150 91.100 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 4811 5751 83.700 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 328 77407 0.424 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 6272 6714 93.400 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 7170 8071 88.800 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 4260 4579 93.000 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3156 3626 87.000 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 168 68900 0.244 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 2934 3432 85.500 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS 26507 61319 43.200 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS 23479 116056 20.200 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 24195 77739 31.100 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 24675 68557 36.000 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS 21787 42023 51.800 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS 22757 121225 18.800 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS 24446 103655 23.600 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS 24904 75844 32.800 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS 26534 88756 29.900 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS 28154 69204 40.700 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS 24770 82810 29.900 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS 26200 73221 35.800 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS 516 66293 0.778 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS 428 66045 0.648 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS 795 78782 1.010 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS 1058 85662 1.240 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS 1065 81418 1.310 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS 1038 78827 1.320 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 52544 52544 100.000 recall ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of reference peaks found in sample peaks.

Unique: Sample peaks not in Reference peaks

Percentage of sample peaks not found in reference peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query subject overlap total Percentage type peaklist1 peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 10359 26854 38.60 precision C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 8108 38766 20.90 precision C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 1718 4831 35.60 precision C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 193799 195749 99.00 precision C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 2182 14851 14.70 precision C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS 5274 32323 16.30 precision C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 1223 6620 18.50 precision C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 9740 22293 43.70 precision C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 345 4318 7.99 precision C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 454 6031 7.53 precision C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3335 10410 32.00 precision C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 394 5649 6.97 precision C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 500 3760 13.30 precision C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 64647 64898 99.60 precision C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 433 3815 11.30 precision C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3014 8742 34.50 precision C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 304 6542 4.65 precision C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 751 6983 10.80 precision C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 71427 73210 97.60 precision C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 557 6120 9.10 precision C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 863 7993 10.80 precision C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 546 6150 8.88 precision C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 940 5751 16.30 precision C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 77079 77407 99.60 precision C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 442 6714 6.58 precision C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 901 8071 11.20 precision C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 319 4579 6.97 precision C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 470 3626 13.00 precision C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 68732 68900 99.80 precision C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 498 3432 14.50 precision C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS 34812 61319 56.80 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS 92577 116056 79.80 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 53544 77739 68.90 precision TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 43882 68557 64.00 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS 20236 42023 48.20 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS 98468 121225 81.20 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS 79209 103655 76.40 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS 50940 75844 67.20 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS 62222 88756 70.10 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS 41050 69204 59.30 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS 58040 82810 70.10 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS 47021 73221 64.20 precision TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS 65777 66293 99.20 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS 65617 66045 99.40 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS 77987 78782 99.00 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS 84604 85662 98.80 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS 80353 81418 98.70 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS 77789 78827 98.70 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 0 52544 0.00 precision ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 38852 52544 73.90 recall C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 23975 52544 45.60 recall C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 49920 52544 95.00 recall C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 50920 52544 96.90 recall C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 42372 52544 80.60 recall C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 29646 52544 56.40 recall C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 46423 52544 88.40 recall C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 37764 52544 71.90 recall C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 47298 52544 90.00 recall C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 45513 52544 86.60 recall C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 44255 52544 84.20 recall C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 45411 52544 86.40 recall C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 48442 52544 92.20 recall C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 52258 52544 99.50 recall C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 48346 52544 92.00 recall C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 46000 52544 87.50 recall C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 42924 52544 81.70 recall C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 44558 52544 84.80 recall C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 50605 52544 96.30 recall C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 45456 52544 86.50 recall C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 43275 52544 82.40 recall C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 45388 52544 86.40 recall C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 46911 52544 89.30 recall C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 52159 52544 99.30 recall C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 44480 52544 84.70 recall C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 43302 52544 82.40 recall C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 46814 52544 89.10 recall C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 48909 52544 93.10 recall C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 52349 52544 99.60 recall C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 49280 52544 93.80 recall C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 11997 52544 22.80 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 1730 52544 3.29 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 4116 52544 7.83 recall TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 6105 52544 11.60 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 32312 52544 61.50 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 1816 52544 3.46 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 3589 52544 6.83 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 8565 52544 16.30 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 8021 52544 15.30 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 14893 52544 28.30 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 6794 52544 12.90 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 9154 52544 17.40 recall TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 51891 52544 98.80 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 52017 52544 99.00 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 51499 52544 98.00 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 51083 52544 97.20 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 51125 52544 97.30 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 51203 52544 97.40 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 0 52544 0.00 recall ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of sample peaks not found in reference peaks.

Unique: Reference peaks not in Sample peaks

Percentage of reference peaks not found in sample peaks (Reference peakfile: ENCODE_H3K27ac_ENCFF038DDS)

query subject overlap total Percentage type peaklist1 peaklist2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 38852 52544 73.90 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 23975 52544 45.60 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 49920 52544 95.00 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 50920 52544 96.90 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 42372 52544 80.60 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 29646 52544 56.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 46423 52544 88.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 37764 52544 71.90 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 47298 52544 90.00 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 45513 52544 86.60 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 44255 52544 84.20 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 45411 52544 86.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 48442 52544 92.20 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 52258 52544 99.50 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 48346 52544 92.00 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 46000 52544 87.50 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 42924 52544 81.70 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 44558 52544 84.80 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 50605 52544 96.30 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 45456 52544 86.50 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 43275 52544 82.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 45388 52544 86.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 46911 52544 89.30 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 52159 52544 99.30 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 44480 52544 84.70 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 43302 52544 82.40 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 46814 52544 89.10 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 48909 52544 93.10 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 52349 52544 99.60 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 49280 52544 93.80 precision ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 11997 52544 22.80 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 1730 52544 3.29 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 4116 52544 7.83 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 6105 52544 11.60 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 32312 52544 61.50 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 1816 52544 3.46 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 3589 52544 6.83 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 8565 52544 16.30 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 8021 52544 15.30 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 14893 52544 28.30 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 6794 52544 12.90 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 9154 52544 17.40 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 51891 52544 98.80 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 52017 52544 99.00 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 51499 52544 98.00 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 51083 52544 97.20 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 51125 52544 97.30 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 51203 52544 97.40 precision ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 0 52544 0.00 precision ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 10359 26854 38.60 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 8108 38766 20.90 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 1718 4831 35.60 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 193799 195749 99.00 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27ac_ENCFF038DDS 2182 14851 14.70 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27ac_ENCFF038DDS 5274 32323 16.30 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 1223 6620 18.50 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 9740 22293 43.70 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 345 4318 7.99 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27ac_ENCFF038DDS 454 6031 7.53 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3335 10410 32.00 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 394 5649 6.97 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 500 3760 13.30 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 64647 64898 99.60 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 433 3815 11.30 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 3014 8742 34.50 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 304 6542 4.65 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 751 6983 10.80 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 71427 73210 97.60 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 557 6120 9.10 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 863 7993 10.80 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 546 6150 8.88 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 940 5751 16.30 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 77079 77407 99.60 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 442 6714 6.58 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 901 8071 11.20 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 319 4579 6.97 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 470 3626 13.00 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 68732 68900 99.80 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27ac_ENCFF038DDS 498 3432 14.50 recall ENCODE_H3K27ac_ENCFF038DDS C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27ac_ENCFF038DDS 34812 61319 56.80 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27ac_ENCFF038DDS 92577 116056 79.80 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 53544 77739 68.90 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27ac_ENCFF038DDS 43882 68557 64.00 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27ac_ENCFF038DDS 20236 42023 48.20 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27ac_ENCFF038DDS 98468 121225 81.20 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27ac_ENCFF038DDS 79209 103655 76.40 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27ac_ENCFF038DDS 50940 75844 67.20 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27ac_ENCFF038DDS 62222 88756 70.10 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27ac_ENCFF038DDS 41050 69204 59.30 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27ac_ENCFF038DDS 58040 82810 70.10 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27ac_ENCFF038DDS 47021 73221 64.20 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27ac_ENCFF038DDS 65777 66293 99.20 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27ac_ENCFF038DDS 65617 66045 99.40 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27ac_ENCFF038DDS 77987 78782 99.00 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27ac_ENCFF038DDS 84604 85662 98.80 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27ac_ENCFF038DDS 80353 81418 98.70 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27ac_ENCFF038DDS 77789 78827 98.70 recall ENCODE_H3K27ac_ENCFF038DDS TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS 0 52544 0.00 recall ENCODE_H3K27ac_ENCFF038DDS ENCODE_H3K27ac_ENCFF038DDS

ChromHMM annotation of reference peaks not found in sample peaks.


3.2 ChIPseeker

EpiCompare uses ChIPseeker::annotatePeak() to annotate peaks with the nearest gene and genomic regions where the peak is located. The peaks are annotated with genes taken from human genome annotations (hg19 or hg38) provided by Bioconductor.


3.3 Functional Enrichment Analysis

EpiCompare performs KEGG pathway and GO enrichment analysis using clusterProfiler. ChIPseeker::annotatePeak() is first used to assign peaks to nearest genes. Biological themes amongst the genes are identified using ontologies (KEGG and GO). The peaks are annotated with genes taken from annotations of human genome (hg19 or hg38) provided by Bioconductor.


KEGG


GO


3.4 Peak Frequency around TSS

This plots peaks that are mapping to transcriptional start sites (TSS). TSS regions are defined as the flanking sequence of the TSS sites. The frequency of peaks in downstream (-3000bp) and upstream (+3000bp) of TSS is plotted. Faint color line around the main frequency line represents the 95% confidence interval estimated by bootstrap method.

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4. Session Info

## R version 4.2.0 (2022-04-22)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.3.1
## 
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] rtracklayer_1.56.0   GenomicRanges_1.48.0 GenomeInfoDb_1.32.2  IRanges_2.30.0       S4Vectors_0.34.0    
## [6] BiocGenerics_0.42.0  EpiCompare_0.99.20   PeakyFinders_0.99.1 
## 
## loaded via a namespace (and not attached):
##   [1] utf8_1.2.2                              reticulate_1.25                        
##   [3] R.utils_2.11.0                          tidyselect_1.1.2                       
##   [5] htmlwidgets_1.5.4                       RSQLite_2.2.14                         
##   [7] AnnotationDbi_1.58.0                    grid_4.2.0                             
##   [9] BiocParallel_1.30.3                     scatterpie_0.1.7                       
##  [11] munsell_0.5.0                           codetools_0.2-18                       
##  [13] colorspace_2.0-3                        GOSemSim_2.22.0                        
##  [15] Biobase_2.56.0                          filelock_1.0.2                         
##  [17] highr_0.9                               knitr_1.39                             
##  [19] MACSr_1.4.0                             rstudioapi_0.13                        
##  [21] DOSE_3.22.0                             labeling_0.4.2                         
##  [23] MatrixGenerics_1.8.0                    GenomeInfoDbData_1.2.8                 
##  [25] polyclip_1.10-0                         seqPattern_1.28.0                      
##  [27] bit64_4.0.5                             farver_2.1.0                           
##  [29] downloader_0.4                          rprojroot_2.0.3                        
##  [31] basilisk_1.8.0                          vctrs_0.4.1                            
##  [33] treeio_1.20.0                           generics_0.1.2                         
##  [35] xfun_0.31                               BiocFileCache_2.4.0                    
##  [37] regioneR_1.28.0                         R6_2.5.1                               
##  [39] graphlayouts_0.8.0                      locfit_1.5-9.5                         
##  [41] bitops_1.0-7                            BRGenomics_1.8.0                       
##  [43] cachem_1.0.6                            fgsea_1.22.0                           
##  [45] gridGraphics_0.5-1                      DelayedArray_0.22.0                    
##  [47] assertthat_0.2.1                        vroom_1.5.7                            
##  [49] promises_1.2.0.1                        BiocIO_1.6.0                           
##  [51] scales_1.2.0                            ggraph_2.0.5                           
##  [53] enrichplot_1.16.1                       gtable_0.3.0                           
##  [55] tidygraph_1.2.1                         rlang_1.0.2                            
##  [57] genefilter_1.78.0                       splines_4.2.0                          
##  [59] lazyeval_0.2.2                          impute_1.70.0                          
##  [61] GEOquery_2.64.2                         BiocManager_1.30.18                    
##  [63] yaml_2.3.5                              reshape2_1.4.4                         
##  [65] crosstalk_1.2.0                         GenomicFeatures_1.48.3                 
##  [67] httpuv_1.6.5                            qvalue_2.28.0                          
##  [69] clusterProfiler_4.4.2                   tools_4.2.0                            
##  [71] gridBase_0.4-7                          ggplotify_0.1.0                        
##  [73] ggplot2_3.3.6                           ellipsis_0.3.2                         
##  [75] gplots_3.1.3                            jquerylib_0.1.4                        
##  [77] RColorBrewer_1.1-3                      Rcpp_1.0.8.3                           
##  [79] plyr_1.8.7                              progress_1.2.2                         
##  [81] zlibbioc_1.42.0                         purrr_0.3.4                            
##  [83] RCurl_1.98-1.6                          basilisk.utils_1.8.0                   
##  [85] prettyunits_1.1.1                       viridis_0.6.2                          
##  [87] SummarizedExperiment_1.26.1             ggrepel_0.9.1                          
##  [89] here_1.0.1                              magrittr_2.0.3                         
##  [91] data.table_1.14.2                       DO.db_2.9                              
##  [93] matrixStats_0.62.0                      hms_1.1.1                              
##  [95] patchwork_1.1.1                         mime_0.12                              
##  [97] evaluate_0.15                           xtable_1.8-4                           
##  [99] XML_3.99-0.9                            gridExtra_2.3                          
## [101] compiler_4.2.0                          biomaRt_2.52.0                         
## [103] tibble_3.1.7                            KernSmooth_2.23-20                     
## [105] crayon_1.5.1                            shadowtext_0.1.2                       
## [107] R.oo_1.24.0                             htmltools_0.5.2                        
## [109] ggfun_0.0.6                             later_1.3.0                            
## [111] tzdb_0.3.0                              tidyr_1.2.0                            
## [113] geneplotter_1.74.0                      aplot_0.1.6                            
## [115] DBI_1.1.2                               genomation_1.28.0                      
## [117] tweenr_1.0.2                            ExperimentHub_2.4.0                    
## [119] ChIPseeker_1.32.0                       dbplyr_2.2.0                           
## [121] MASS_7.3-57                             rappdirs_0.3.3                         
## [123] boot_1.3-28                             Matrix_1.4-1                           
## [125] readr_2.1.2                             piggyback_0.1.3                        
## [127] cli_3.3.0                               R.methodsS3_1.8.1                      
## [129] parallel_4.2.0                          igraph_1.3.1                           
## [131] pkgconfig_2.0.3                         TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [133] GenomicAlignments_1.32.0                dir.expiry_1.4.0                       
## [135] plotly_4.10.0                           xml2_1.3.3                             
## [137] ggtree_3.4.0                            annotate_1.74.0                        
## [139] bslib_0.3.1                             XVector_0.36.0                         
## [141] yulab.utils_0.0.4                       stringr_1.4.0                          
## [143] digest_0.6.29                           Biostrings_2.64.0                      
## [145] rmarkdown_2.14                          fastmatch_1.1-3                        
## [147] tidytree_0.3.9                          restfulr_0.0.14                        
## [149] curl_4.3.2                              gtools_3.9.2.1                         
## [151] shiny_1.7.1                             Rsamtools_2.12.0                       
## [153] rjson_0.2.21                            lifecycle_1.0.1                        
## [155] nlme_3.1-157                            jsonlite_1.8.0                         
## [157] viridisLite_0.4.0                       limma_3.52.1                           
## [159] BSgenome_1.64.0                         fansi_1.0.3                            
## [161] pillar_1.7.0                            lattice_0.20-45                        
## [163] plotrix_3.8-2                           KEGGREST_1.36.0                        
## [165] fastmap_1.1.0                           httr_1.4.3                             
## [167] survival_3.3-1                          GO.db_3.15.0                           
## [169] interactiveDisplayBase_1.34.0           glue_1.6.2                             
## [171] UpSetR_1.4.0                            png_0.1-7                              
## [173] BiocVersion_3.15.2                      bit_4.0.4                              
## [175] sass_0.4.1                              ggforce_0.3.3                          
## [177] stringi_1.7.6                           blob_1.2.3                             
## [179] org.Hs.eg.db_3.15.0                     DESeq2_1.36.0                          
## [181] AnnotationHub_3.4.0                     caTools_1.18.2                         
## [183] memoise_2.0.1                           dplyr_1.0.9                            
## [185] ape_5.6-2